Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| HNSC | rs3215664 | chr6:74346090 | A/AT | 3.14E-5 | 412 | 17.13 | 13.1 | 12.73 | KM Plot |
| HNSC | rs33978196 | chr8:92179210 | TCA/T | 1.39E-7 | 409 | 16.3 | 14.13 | 5.4 | KM Plot |
| HNSC | rs34089089 | chr2:218313289 | T/C | 5.23E-5 | 403 | 16.17 | 19.2 | 9.28 | KM Plot |
| HNSC | rs34099992 | chr6:74364207 | CTT/C | 5.31E-5 | 409 | 6.47 | 12.95 | 17.23 | KM Plot |
| HNSC | rs34247969 | chr22:24555965 | G/A | 2.36E-6 | 412 | 16.3 | 17.07 | 8.63 | KM Plot |
| HNSC | rs34252064 | chr6:33694659 | G/A | 3.6E-6 | 408 | 17.07 | 11.18 | 6.23 | KM Plot |
| HNSC | rs34340160 | chr6:74344755 | T/TA | 3.14E-5 | 412 | 17.13 | 13.1 | 12.73 | KM Plot |
| HNSC | rs34823607 | chr2:218313265 | A/G | 5.23E-5 | 403 | 16.17 | 19.2 | 9.28 | KM Plot |
| HNSC | rs34943654 | chr2:218313717 | T/C | 5.24E-5 | 402 | 16.2 | 19.2 | 9.28 | KM Plot |
| HNSC | rs35386791 | chr4:110764207 | A/G | 6.76E-5 | 401 | 13.13 | 16.35 | 16.5 | KM Plot |
| HNSC | rs3731232 | chr9:21978443 | C/G | 1.59E-10 | 412 | 5.08 | 14.13 | 18.6 | KM Plot |
| HNSC | rs373521066 | chr1:213028505 | CCAAGCTCAGTG/C | 1.84E-5 | 410 | 16.13 | 19.72 | 5.03 | KM Plot |
| HNSC | rs3739647 | chr9:5774159 | C/T | 9.6E-9 | 412 | 2.97 | 14.22 | 16.5 | KM Plot |
| HNSC | rs3752497 | chr22:24581207 | C/T | 2.21E-5 | 410 | 16.4 | 15.87 | 10.02 | KM Plot |
| HNSC | rs3763700 | chr10:6181709 | T/C | 1.3E-5 | 402 | 20.2 | 13.17 | 15.22 | KM Plot |